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LOC105376635 uncharacterized LOC105376635 [ Homo sapiens (human) ]

Gene ID: 105376635, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105376635
Gene description
uncharacterized LOC105376635
See related
Ensembl:ENSG00000254562
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376635 in Genome Data Viewer
Location:
11p12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (38646476..38687748)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (38790950..38832191)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (38668026..38709298)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376634 Neighboring gene DNAAF11 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:38272133-38272636 Neighboring gene MPRA-validated peak1259 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:38615819-38617018 Neighboring gene long intergenic non-protein coding RNA 2759 Neighboring gene long intergenic non-protein coding RNA 1493 Neighboring gene uncharacterized LOC101928563 Neighboring gene ribosomal protein L18 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188550.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022796, AC027157

  2. NR_188551.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022796, AC027157

  3. NR_188552.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022796, AC027157
    Related
    ENST00000665044.1

  4. NR_188553.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022796, AC027157
    Related
    ENST00000660482.2

  5. NR_188554.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022796, AC027157
    Related
    ENST00000664652.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    38646476..38687748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    38790950..38832191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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