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LOC105377157 uncharacterized LOC105377157 [ Homo sapiens (human) ]

Gene ID: 105377157, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377157
Gene description
uncharacterized LOC105377157
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (71993699..71996122)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72032855..72035307)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71864572-71865144 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:71865145-71865717 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:71866364-71867052 Neighboring gene RNA, 7SL, cytoplasmic 271, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr3:71922109-71922645 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:71924591-71925522 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:71926453-71927384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71956813-71957604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71970346-71970846 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71974040-71974906 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:71974907-71975774 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:71976973-71977838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14524 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:72023234-72023416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72027929-72028603 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:72031234-72032433 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:72054171-72054383 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:72067180-72068379 Neighboring gene UBE2Q2 pseudogene 9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72073913-72074414 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72074415-72074914 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72096703-72097203 Neighboring gene long intergenic non-protein coding RNA 877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20070 Neighboring gene CCDC137 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    71993699..71996122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940957.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72032855..72035307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073617.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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