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LOC105377158 uncharacterized LOC105377158 [ Homo sapiens (human) ]

Gene ID: 105377158, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377158
Gene description
uncharacterized LOC105377158
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72274735..72307417, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72315254..72347926, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20074 Neighboring gene long intergenic non-protein coding RNA 870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72226281-72226881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14526 Neighboring gene Sharpr-MPRA regulatory region 12200 Neighboring gene NANOG hESC enhancer GRCh37_chr3:72242807-72243499 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:72245432-72246000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252370-72252906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252907-72253442 Neighboring gene uncharacterized LOC124909393 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:72291263-72291470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20082 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:72318159-72319358 Neighboring gene CRISPRi-validated cis-regulatory element chr3.2860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72340695-72341195 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:72348604-72349803 Neighboring gene Sharpr-MPRA regulatory region 8765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20085 Neighboring gene uncharacterized LOC105377159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72367959-72368500 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72384094-72384660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14527 Neighboring gene MPRA-validated peak4695 silencer Neighboring gene RING1 and YY1 binding protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20086

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    72274735..72307417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740749.3 RNA Sequence

  2. XR_001740750.3 RNA Sequence

  3. XR_001740748.3 RNA Sequence

  4. XR_940959.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72315254..72347926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073620.1 RNA Sequence

  2. XR_007073621.1 RNA Sequence

  3. XR_007073618.1 RNA Sequence

  4. XR_007073619.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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