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LOC105377160 uncharacterized LOC105377160 [ Homo sapiens (human) ]

Gene ID: 105377160, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377160
Gene description
uncharacterized LOC105377160
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377160 in Genome Data Viewer
Location:
3p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72458621..72463575)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72500579..72505533)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72367959-72368500 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72384094-72384660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14527 Neighboring gene MPRA-validated peak4695 silencer Neighboring gene RING1 and YY1 binding protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14529 Neighboring gene Sharpr-MPRA regulatory region 11074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20087 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72531660-72532160 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72536327-72536844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72536845-72537362 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72539260-72539964 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72541478-72541982 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20088 Neighboring gene NANOG hESC enhancer GRCh37_chr3:72585386-72586027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20089 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:72604422-72604612 Neighboring gene uncharacterized LOC124909394 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    72458621..72463575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940961.3 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332691.1 Reference GRCh38.p14 PATCHES

    Range
    133560..138514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_953245.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72500579..72505533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073623.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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