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FAM247C family with sequence similarity 247 member C [ Homo sapiens (human) ]

Gene ID: 105377182, updated on 10-Oct-2023

Summary

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Official Symbol
FAM247Cprovided by HGNC
Official Full Name
family with sequence similarity 247 member Cprovided by HGNC
Primary source
HGNC:HGNC:54928
See related
AllianceGenome:HGNC:54928
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 7.0), brain (RPKM 5.6) and 24 other tissues See more
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Genomic context

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See FAM247C in Genome Data Viewer
Location:
22q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18758535..18769847, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 26 pseudogene 4 Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18717837-18718338 Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18721144-18721645 Neighboring gene family with sequence similarity 230 member E Neighboring gene gamma-glutamyltransferase 3 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:18784852-18785463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18790287-18790788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18790789-18791288 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18808119-18808632 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18808633-18809148 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18809149-18809662 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18809663-18810176 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr22:18810177-18810690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18811010-18811514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18812019-18812522 Neighboring gene E2F transcription factor 6 pseudogene 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000022.11 Chromosome 22 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Formation of human long intergenic non-coding RNA genes, pseudogenes, and protein genes: Ancestral sequences are key players. Delihas N. PLoS One, 2020. PMID 32214344, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18758535..18769847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937989.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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