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LOC105377515 uncharacterized LOC105377515 [ Homo sapiens (human) ]

Gene ID: 105377515, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377515
Gene description
uncharacterized LOC105377515
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377515 in Genome Data Viewer
Location:
4q32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (161234008..161252202, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (164584293..164602487, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377513 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75168 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75188 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75194 Neighboring gene uncharacterized LOC105377514 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75287 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75306 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:162017778-162018000 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75339 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75379 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75396 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:162118905-162119539 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75444 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15779 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75511 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:162314653-162315207 Neighboring gene follistatin like 5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:162446057-162446894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22094 Neighboring gene Sharpr-MPRA regulatory region 7835 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:162743095-162743596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:162748311-162748812 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:162748813-162749312 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:162857394-162858593 Neighboring gene uncharacterized LOC101928052 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75539 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75545 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22095 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75628 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    161234008..161252202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939409.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    164584293..164602487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075348.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials