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LOC105377558 uncharacterized LOC105377558 [ Homo sapiens (human) ]

Gene ID: 105377558, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377558
Gene description
uncharacterized LOC105377558
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377558 in Genome Data Viewer
Location:
4q34.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177342711..177381354, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180680501..180720167, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:178112608-178113209 Neighboring gene RN7SK pseudogene 136 Neighboring gene uncharacterized LOC105377557 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:178176457-178176976 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22169 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22170 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:178363543-178364086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22171 Neighboring gene RNA, 5S ribosomal pseudogene 172 Neighboring gene AGA divergent transcript Neighboring gene aspartylglucosaminidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    177342711..177381354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058384.1 RNA Sequence

  2. XR_001741926.2 RNA Sequence

  3. XR_007058383.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    180680501..180720167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075178.1 RNA Sequence

  2. XR_007075176.1 RNA Sequence

  3. XR_007075177.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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