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LINC02534 long intergenic non-protein coding RNA 2534 [ Homo sapiens (human) ]

Gene ID: 105377962, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02534provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2534provided by HGNC
Primary source
HGNC:HGNC:53567
See related
Ensembl:ENSG00000228777 AllianceGenome:HGNC:53567
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02534 in Genome Data Viewer
Location:
6q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (115633542..115643835, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (116817094..116827381, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (115954706..115964999, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:115391597-115392796 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_87752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115571209-115571710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:115571711-115572210 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:115735940-115736652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:115736653-115737364 Neighboring gene uncharacterized LOC105377961 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_87934 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_87979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:116049821-116050322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:116210349-116211066 Neighboring gene uncharacterized LOC124901385 Neighboring gene NANOG hESC enhancer GRCh37_chr6:116235207-116235708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24976 Neighboring gene fyn related Src family tyrosine kinase Neighboring gene triosephosphate isomerase 1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134602.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI215976, AL512407, CR741031
    Related
    ENST00000446525.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    115633542..115643835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    116817094..116827381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases