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LINC02536 long intergenic non-protein coding RNA 2536 [ Homo sapiens (human) ]

Gene ID: 105377997, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02536provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2536provided by HGNC
Primary source
HGNC:HGNC:53570
See related
AllianceGenome:HGNC:53570
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02536 in Genome Data Viewer
Location:
6q22.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (127663865..127680436)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (128852795..128869370)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377996 Neighboring gene chromosome 6 open reading frame 58 pseudogene Neighboring gene TBL1X/Y related 1 pseudogene Neighboring gene uncharacterized LOC124901400 Neighboring gene thymocyte selection associated Neighboring gene mitochondrial ribosomal protein S17 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    127663865..127680436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743851.2 RNA Sequence

  2. XR_001743853.2 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187556.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    9063..25634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756269.2 RNA Sequence

  2. XR_001756271.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    128852795..128869370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077111.1 RNA Sequence

  2. XR_007077112.1 RNA Sequence

Nucleotide Protein
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