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LOC105378098 uncharacterized LOC105378098 [ Homo sapiens (human) ]

Gene ID: 105378098, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378098
Gene description
uncharacterized LOC105378098
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378098 in Genome Data Viewer
Location:
6q26
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (161470977..161484045)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (162829850..162842919)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (161892009..161905077)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161775686-161776186 Neighboring gene Sharpr-MPRA regulatory region 4750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161796209-161796749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161836417-161836942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161836943-161837468 Neighboring gene uncharacterized LOC124901456 Neighboring gene MPRA-validated peak6306 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:161865259-161865763 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:161864752-161865258 Neighboring gene NANOG hESC enhancer GRCh37_chr6:161919346-161919847 Neighboring gene parkin RBR E3 ubiquitin protein ligase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161939551-161940051 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:161954848-161955039 Neighboring gene Sharpr-MPRA regulatory region 5576 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:162074308-162074601 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:162074817-162076016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:162102647-162103226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:162103227-162103804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:162148005-162148758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25415 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:162399319-162399820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:162399821-162400320 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:162484237-162485436 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:162520224-162521423 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:162621359-162622558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:162639333-162639833 Neighboring gene uncharacterized LOC105378097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:162759597-162760144 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:162760145-162760692 Neighboring gene uncharacterized LOC105369171

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134593.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    DB041402, DB048234

  2. NR_134594.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 3' region, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    DB041402, DB048234

  3. NR_134595.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon and contains an alternate exon in the 3' region, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    DB041402, DB045952, DB048234

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    161470977..161484045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    162829850..162842919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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