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LOC105378258 uncharacterized LOC105378258 [ Homo sapiens (human) ]

Gene ID: 105378258, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378258
Gene description
uncharacterized LOC105378258
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.4) See more
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Genomic context

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See LOC105378258 in Genome Data Viewer
Location:
12q24.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (121059290..121092995, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (121049804..121083677, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene HNF1 homeobox A Neighboring gene chromosome 12 open reading frame 43 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:121453469-121453984 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:121454193-121454386 Neighboring gene 2'-5'-oligoadenylate synthetase like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121476213-121476714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121476715-121477214 Neighboring gene Sharpr-MPRA regulatory region 13012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7156 Neighboring gene 2'-5' oligoadenylate synthetase like 2, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121530887-121531388 Neighboring gene uncharacterized LOC105370031 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene uncharacterized LOC105370030

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    121059290..121092995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063492.1 RNA Sequence

  2. XR_945451.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    121049804..121083677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083158.1 RNA Sequence

  2. XR_007083157.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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