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LOC105378375 uncharacterized LOC105378375 [ Homo sapiens (human) ]

Gene ID: 105378375, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105378375
Gene description
uncharacterized LOC105378375
See related
Ensembl:ENSG00000230417
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378375 in Genome Data Viewer
Location:
10q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (78179185..78193074)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (79048078..79062170)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3613 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:79799147-79799658 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:79799659-79800168 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:79800489-79800990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3614 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3616 Neighboring gene ribosomal protein S24 Neighboring gene G protein subunit alpha i2 pseudogene 2 Neighboring gene VISTA enhancer hs2223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:79963019-79963518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:79971794-79972350 Neighboring gene VISTA enhancer hs1974 Neighboring gene uncharacterized LOC124902467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80011981-80012494 Neighboring gene long intergenic non-protein coding RNA 856

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    78179185..78193074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946096.3 RNA Sequence

    Related
    ENST00000813734.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    79048078..79062170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081376.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials