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LOC105378400 uncharacterized LOC105378400 [ Homo sapiens (human) ]

Gene ID: 105378400, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378400
Gene description
uncharacterized LOC105378400
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (84847235..84874407)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (85727172..85754343)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:86327357-86327873 Neighboring gene uncharacterized LOC124902550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86343155-86343654 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:86347199-86347996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86348016-86348530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86348531-86349044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86350401-86350902 Neighboring gene RPS3A pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:86410577-86411096 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:86521771-86522640 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17738 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17744 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17754 Neighboring gene uncharacterized LOC107984249 Neighboring gene uncharacterized LOC105378401 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:86858502-86859701 Neighboring gene long intergenic non-protein coding RNA 1519

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    84847235..84874407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946150.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    85727172..85754343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080972.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases