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LOC105378414 uncharacterized LOC105378414 [ Homo sapiens (human) ]

Gene ID: 105378414, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378414
Gene description
uncharacterized LOC105378414
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378414 in Genome Data Viewer
Location:
10q23.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (88042266..88058177)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (88926182..88944079)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene phosphatase and tensin homolog Neighboring gene ribosomal protein L11 pseudogene 3 Neighboring gene small nucleolar RNA SNORD74 Neighboring gene NANOG hESC enhancer GRCh37_chr10:89766449-89767006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2588 Neighboring gene Sharpr-MPRA regulatory region 1114 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3717 Neighboring gene mediator complex subunit 6 pseudogene 1 Neighboring gene uncharacterized LOC105378415 Neighboring gene Sharpr-MPRA regulatory region 10781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3719 Neighboring gene uncharacterized LOC105378416

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    88042266..88058177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747303.1 RNA Sequence

  2. XR_001747304.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    88926182..88944079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081193.1 RNA Sequence

  2. XR_007081194.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials