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LINC02641 long intergenic non-protein coding RNA 2641 [ Homo sapiens (human) ]

Gene ID: 105378531, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02641provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2641provided by HGNC
Primary source
HGNC:HGNC:54125
See related
Ensembl:ENSG00000286344 AllianceGenome:HGNC:54125
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02641 in Genome Data Viewer
Location:
10q26.13
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (123347923..123562213)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (124224438..124438687)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984275 Neighboring gene ribosomal protein S26 pseudogene 39 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:124984539-124985040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125034867-125035366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4158 Neighboring gene VISTA enhancer hs578 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:125194236-125194421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125206418-125206918 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:125218162-125218857 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125218858-125219552 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125219553-125220248 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:125251140-125251910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256249-125256976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125256977-125257703 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125272859-125273407 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125273408-125273955 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:125298302-125299501 Neighboring gene uncharacterized LOC105378530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125309926-125310436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125310437-125310946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4161 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125317863-125318581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125347653-125348156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:125366796-125367386 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125399083-125399626 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125399627-125400170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125425079-125425616 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125425617-125426155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125426156-125426693 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125430545-125431046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125443142-125443642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125443643-125444143 Neighboring gene uncharacterized LOC105378532 Neighboring gene G protein-coupled receptor 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    123347923..123562213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062326.1 RNA Sequence

  2. XR_002957104.1 RNA Sequence

  3. XR_002957105.1 RNA Sequence

  4. XR_001747617.3 RNA Sequence

  5. XR_001747619.3 RNA Sequence

  6. XR_001747616.2 RNA Sequence

  7. XR_001747618.2 RNA Sequence

  8. XR_946398.3 RNA Sequence

  9. XR_001747620.2 RNA Sequence

  10. XR_946391.3 RNA Sequence

    Related
    ENST00000665714.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    124224438..124438687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081143.1 RNA Sequence

  2. XR_007081140.1 RNA Sequence

  3. XR_007081138.1 RNA Sequence

  4. XR_007081142.1 RNA Sequence

  5. XR_007081146.1 RNA Sequence

  6. XR_007081145.1 RNA Sequence

  7. XR_007081147.1 RNA Sequence

  8. XR_007081144.1 RNA Sequence

  9. XR_007081148.1 RNA Sequence

  10. XR_007081141.1 RNA Sequence

  11. XR_007081139.1 RNA Sequence

  12. XR_007081150.1 RNA Sequence

  13. XR_007081149.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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