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LINC03068 long intergenic non-protein coding RNA 3068 [ Homo sapiens (human) ]

Gene ID: 105378568, updated on 10-Oct-2023

Summary

Official Symbol
LINC03068provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3068provided by HGNC
Primary source
HGNC:HGNC:56640
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
10q26.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (132432762..132444982, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (133381071..133393641, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134208622-134209145 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134209146-134209668 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2958 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134211239-134211761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134211762-134212284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134214271-134215047 Neighboring gene PWWP domain containing 2B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134218733-134219360 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134221245-134221872 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134221873-134222500 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134222501-134223127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134227291-134227958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134231824-134232727 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134232728-134233632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2961 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2963 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134235443-134236346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134237164-134237690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134244072-134244572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134252266-134252930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134252931-134253594 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2965 Neighboring gene long intergenic non-protein coding RNA 2870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134266794-134267658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2968 Neighboring gene uncharacterized LOC105378569 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134278755-134279345

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184029.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451069
  2. NR_184030.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451069

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    132432762..132444982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    133381071..133393641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)