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LOC105378642 uncharacterized LOC105378642 [ Homo sapiens (human) ]

Gene ID: 105378642, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378642
Gene description
uncharacterized LOC105378642
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378642 in Genome Data Viewer
Location:
1p34.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (34710017..34724256, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (34572655..34586894, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378639 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:34790003-34791202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 713 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 714 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:34861492-34862088 Neighboring gene uncharacterized LOC105378641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:35015054-35015554 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:35037423-35038072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:35105477-35105976 Neighboring gene microRNA 552 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:35175267-35175426 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:35183501-35184700 Neighboring gene gap junction protein beta 5 Neighboring gene gap junction protein beta 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    34710017..34724256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737971.2 RNA Sequence

  2. XR_007065726.1 RNA Sequence

  3. XR_007065731.1 RNA Sequence

  4. XR_007065729.1 RNA Sequence

  5. XR_947174.3 RNA Sequence

  6. XR_007065734.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    34572655..34586894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070060.1 RNA Sequence

  2. XR_007070057.1 RNA Sequence

  3. XR_007070058.1 RNA Sequence

  4. XR_007070061.1 RNA Sequence

  5. XR_007070059.1 RNA Sequence

  6. XR_007070062.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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