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LOC105378740 uncharacterized LOC105378740 [ Homo sapiens (human) ]

Gene ID: 105378740, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378740
Gene description
uncharacterized LOC105378740
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward thyroid (RPKM 1.4) See more
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Genomic context

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See LOC105378740 in Genome Data Viewer
Location:
1p32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (55783661..55854927, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (55666960..55738222, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 291 Neighboring gene RNA, U6 small nuclear 830, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:55894365-55895564 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8495 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:55991682-55991848 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1074 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56185632-56186132 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56186133-56186633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56225851-56226376 Neighboring gene VISTA enhancer hs1622 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8540 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8557 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8565 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8598 Neighboring gene long intergenic non-protein coding RNA 1753 Neighboring gene long intergenic non-protein coding RNA 1755 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    55783661..55854927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947380.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    55666960..55738222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070222.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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