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LINC01767 long intergenic non-protein coding RNA 1767 [ Homo sapiens (human) ]

Gene ID: 105378744, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01767provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1767provided by HGNC
Primary source
HGNC:HGNC:52557
See related
Ensembl:ENSG00000223956 AllianceGenome:HGNC:52557
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CRLM1
Expression
Biased expression in liver (RPKM 5.1) and small intestine (RPKM 0.1) See more
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Genomic context

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Location:
1p32.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (56414963..56415966)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (56294109..56295112)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (56880635..56881638)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904186 Neighboring gene ribosomal protein SA pseudogene 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56835566-56836092 Neighboring gene uncharacterized LOC124904185 Neighboring gene Sharpr-MPRA regulatory region 1049 Neighboring gene uncharacterized LOC124904189 Neighboring gene Sharpr-MPRA regulatory region 6809 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56917723-56918398 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:56918399-56919074 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:56919075-56919750 Neighboring gene Sharpr-MPRA regulatory region 2463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56942601-56943374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56956069-56956568 Neighboring gene NANOG hESC enhancer GRCh37_chr1:56959749-56960407 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:56975627-56976357 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56977343-56977844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56977845-56978344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1078 Neighboring gene phospholipid phosphatase 3 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:56996995-56997730 Neighboring gene Sharpr-MPRA regulatory region 2243 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:57001027-57001670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:57002869-57003370 Neighboring gene ribosomal protein L21 pseudogene 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA CRLM1 inhibits apoptosis and promotes metastasis through transcriptional regulation cooperated with hnRNPK in colorectal cancer. Wang Z, et al. Cell Biosci, 2022 Jul 30. PMID 35907898, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • colorectal liver metastases lncRNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147163.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX105201
    Related
    ENST00000451914.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    56414963..56415966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    56294109..56295112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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