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LOC105378898 uncharacterized LOC105378898 [ Homo sapiens (human) ]

Gene ID: 105378898, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378898
Gene description
uncharacterized LOC105378898
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
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Genomic context

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See LOC105378898 in Genome Data Viewer
Location:
1p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (110473757..110474082)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (110488862..110489187)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene prokineticin 1 Neighboring gene uncharacterized LOC105378899 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr1:111019910-111020410 and GRCh37_chr1:111020411-111020911 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:111025901-111026479 Neighboring gene chymosin, pseudogene Neighboring gene CYMP antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:111036419-111037385 Neighboring gene potassium voltage-gated channel subfamily A member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    110473757..110474082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738181.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    110488862..110489187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070528.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials