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LOC105378920 uncharacterized LOC105378920 [ Homo sapiens (human) ]

Gene ID: 105378920, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378920
Gene description
uncharacterized LOC105378920
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 1.1), small intestine (RPKM 0.3) and 2 other tissues See more
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Genomic context

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See LOC105378920 in Genome Data Viewer
Location:
1p13.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (116277934..116336318, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (116285958..116344412, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904384 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1558 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:116712258-116712441 Neighboring gene Sharpr-MPRA regulatory region 10090 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:116773350-116773887 Neighboring gene uncharacterized LOC105378919 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1561 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1 Neighboring gene ATP1A1 antisense RNA 1 Neighboring gene RNA, U6 small nuclear 817, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    116277934..116336318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738197.2 RNA Sequence

  2. XR_947728.3 RNA Sequence

  3. XR_947729.3 RNA Sequence

  4. XR_947730.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    116285958..116344412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070559.1 RNA Sequence

  2. XR_007070556.1 RNA Sequence

  3. XR_007070557.1 RNA Sequence

  4. XR_007070558.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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