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LOC105379027 uncharacterized LOC105379027 [ Homo sapiens (human) ]

Gene ID: 105379027, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379027
Gene description
uncharacterized LOC105379027
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379027 in Genome Data Viewer
Location:
5q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (71881515..71886584)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (72362720..72367789)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:71015240-71016126 Neighboring gene CART prepropeptide Neighboring gene catenin beta 1 pseudogene Neighboring gene Sharpr-MPRA regulatory region 1504 Neighboring gene Sharpr-MPRA regulatory region 1479 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22643 Neighboring gene uncharacterized LOC107986382 Neighboring gene uncharacterized LOC124901000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    71881515..71886584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742514.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    72362720..72367789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075684.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials