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LOC105379289 uncharacterized LOC105379289 [ Homo sapiens (human) ]

Gene ID: 105379289, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105379289
Gene description
uncharacterized LOC105379289
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379289 in Genome Data Viewer
Location:
8p22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12865466..12890736)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (13131587..13156911)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene microRNA 3926-1 Neighboring gene microRNA 3926-2 Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18950 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18951 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:12612250-12612440 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12612509-12613328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27045 Neighboring gene long intergenic non-protein coding RNA 3019 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12651516-12652033 Neighboring gene long intergenic non-protein coding RNA 681 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12726438-12727079 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12758236-12758737 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12799399-12799938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12808376-12808876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18955 Neighboring gene regulator of solute carriers 1 pseudogene Neighboring gene tRNA methyltransferase 9B (putative) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12829815-12830334 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12834091-12834678 Neighboring gene uncharacterized LOC124901889 Neighboring gene Sharpr-MPRA regulatory region 1393

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12865466..12890736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949509.3 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    6060772..6086092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959189.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    13131587..13156911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078743.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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