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NCOR1P4 NCOR1 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 105379511, updated on 17-Sep-2024

Summary

Official Symbol
NCOR1P4provided by HGNC
Official Full Name
NCOR1 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:54557
See related
AllianceGenome:HGNC:54557
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.5) See more
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Genomic context

See NCOR1P4 in Genome Data Viewer
Location:
21p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (9543030..9559268)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (9109573..9125832)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak4333 silencer Neighboring gene tektin 4 pseudogene 2 Neighboring gene sorting nexin 18 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9988843-9989025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9999495-9999996 Neighboring gene uncharacterized LOC101930100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10177673-10178174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10178175-10178674 Neighboring gene putative ankyrin repeat domain-containing protein 20A12 Neighboring gene protein FAM182A-like Neighboring gene uncharacterized LOC124905061

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135512.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124864

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    9543030..9559268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    9109573..9125832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)