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PNKY long intergenic non-protein coding RNA PNKY [ Homo sapiens (human) ]

Gene ID: 105447646, updated on 13-Mar-2024

Summary

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Gene symbol
PNKY
Gene description
long intergenic non-protein coding RNA PNKY
Primary source
MIM:616328
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
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Genomic context

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See PNKY in Genome Data Viewer
Location:
6q16.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (98830141..98831700, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (100004511..100006070, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (99278017..99279576, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3 Neighboring gene VISTA enhancer hs284 Neighboring gene VISTA enhancer hs1128 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98864666-98865249 Neighboring gene VISTA enhancer hs1081 Neighboring gene uncharacterized LOC105377910 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98973520-98974100 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98974101-98974679 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98998595-98999096 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99084768-99085311 Neighboring gene VISTA enhancer hs1085 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:99150974-99151146 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99164203-99164752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99235638-99236138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99236139-99236639 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273031-99273536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273537-99274042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99283167-99283763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99283764-99284359 Neighboring gene uncharacterized LOC124901364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17412 Neighboring gene POU class 3 homeobox 2 Neighboring gene CRE2 CAGE-defined tissue-specific enhancer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of BDNF-Associated lncRNAs in Treatment-Resistant Schizophrenia Patients. Badrlou E, et al. J Mol Neurosci, 2021 Nov. PMID 33403596
  2. Blood and tissue levels of lncRNAs in periodontitis. Sayad A, et al. J Cell Physiol, 2020 Dec. PMID 32372456
  3. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Ramos AD, et al. Cell Stem Cell, 2015 Apr 2. PMID 25800779, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expression of BDNF-Associated lncRNAs in Treatment-Resistant Schizophrenia Patients.
    Title: Expression of BDNF-Associated lncRNAs in Treatment-Resistant Schizophrenia Patients.
  2. Blood and tissue levels of lncRNAs in periodontitis.
    Title: Blood and tissue levels of lncRNAs in periodontitis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148381.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022395, AL589826

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    98830141..98831700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    100004511..100006070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials