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TRPV1 transient receptor potential cation channel subfamily V member 1 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105583822, updated on 13-Mar-2024

Summary

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Gene symbol
TRPV1
Gene description
transient receptor potential cation channel subfamily V member 1
See related
Ensembl:ENSCATG00000041693
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See TRPV1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012000250.1 (12396473..12458171)

NW_012000250.1Genomic Context describing neighboring genes Neighboring gene Tax1 binding protein 3 Neighboring gene uncharacterized LOC105583827 Neighboring gene cystinosin, lysosomal cystine transporter Neighboring gene transient receptor potential cation channel subfamily V member 3 Neighboring gene aspartoacylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012000250.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily V member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012000250.1 Reference Caty_1.0

    Range
    12396473..12458171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012055959.1 → XP_011911349.1  transient receptor potential cation channel subfamily V member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5NKN3
    Conserved Domains (3) summary
    cd00204
    Location:213 → 367
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:65 → 838
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:215 → 245
    ANK; ANK repeat [structural motif]

  2. XM_012055948.1 → XP_011911338.1  transient receptor potential cation channel subfamily V member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5NKN3
    Related
    ENSCATP00000038017.1, ENSCATT00000062319.1
    Conserved Domains (3) summary
    cd00204
    Location:200 → 354
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:52 → 825
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:202 → 232
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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