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LOC105664402 beta-1-syntrophin-like [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 105664402, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105664402
Gene description
beta-1-syntrophin-like
See related
EnsemblRapid:LOC105664402
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
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Genomic context

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See LOC105664402 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797053.1 (392213..602493, complement)

NW_003797053.1Genomic Context describing neighboring genes Neighboring gene unconventional myosin-IXb-like dachs Neighboring gene beta-1-syntrophin-like Neighboring gene purine nucleoside phosphorylase-like Neighboring gene putative ATPase N2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003797053.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1-syntrophin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797053.1 Reference MROT_1.0

    Range
    392213..602493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012279099.1 → XP_012134489.1  beta-1-syntrophin-like

    Related
    XP_012134489.1, XM_012279099.1
    Conserved Domains (2) summary
    cd00992
    Location:193 → 272
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17171
    Location:127 → 158
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases