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Gm28043 predicted gene, 28043 [ Mus musculus (house mouse) ]

Gene ID: 106014251, updated on 17-Aug-2024

Summary

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Official Symbol
Gm28043provided by MGI
Official Full Name
predicted gene, 28043provided by MGI
Primary source
MGI:MGI:5547779
See related
AllianceGenome:MGI:5547779
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnf8-cmtr1
Summary
This locus represents naturally occurring readthrough transcription between the neighboring Rnf8 (ring finger protein 8) and Cmtr1 (cap methyltransferase 1) genes on chromosome 17. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jul 2015]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 12.7), cerebellum adult (RPKM 12.2) and 28 other tissues See more
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Genomic context

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See Gm28043 in Genome Data Viewer
Location:
17 A3.3; 17
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29833763..29924953)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (29614789..29705979)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene transmembrane 217B Neighboring gene transmembrane protein 217 Neighboring gene STARR-seq mESC enhancer starr_42293 Neighboring gene TBC1 domain family, member 22B Neighboring gene TBC1 domain family, member 22B, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E7509 Neighboring gene microRNA 7667 Neighboring gene ring finger protein 8 Neighboring gene predicted gene, 20161 Neighboring gene cap methyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1501 Neighboring gene coiled-coil domain containing 167 Neighboring gene STARR-positive B cell enhancer ABC_E7510 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29906709-29906939 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29978669-29978970 Neighboring gene STARR-seq mESC enhancer starr_42296 Neighboring gene STARR-seq mESC enhancer starr_42297 Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 1 Neighboring gene STARR-seq mESC enhancer starr_42299 Neighboring gene predicted gene, 41559 Neighboring gene STARR-seq mESC enhancer starr_42301 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:30116968-30117151 Neighboring gene predicted gene, 22327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Readthrough Gm28043

Included genes: Rnf8, Cmtr1

Other Names

  • Rnf8-cmtr1 readthrough

Clone Names

  • KIAA0646

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132314.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154279, AC163629

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    29833763..29924953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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