U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01394 long intergenic non-protein coding RNA 1394 [ Homo sapiens (human) ]

Gene ID: 106144586, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01394provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1394provided by HGNC
Primary source
HGNC:HGNC:50670
See related
AllianceGenome:HGNC:50670
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00012639
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC01394 in Genome Data Viewer
Location:
6p25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (1323475..1389461, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (1186964..1252647, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374879 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:1286792-1287991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1312787-1313503 Neighboring gene forkhead box Q1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:1348887-1349536 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1378296-1378809 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1384005-1384784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1384785-1385564 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1390993-1391858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1400269-1400770 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:1402119-1402268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1407479-1408328 Neighboring gene microRNA 6720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:1410403-1411023 Neighboring gene forkhead box F2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1416044-1417026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1433994-1434664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:1437542-1438506 Neighboring gene uncharacterized LOC102723944 Neighboring gene uncharacterized LOC105374883

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187218.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL034346, AL499606

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    1323475..1389461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    1186964..1252647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases