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LOC106341842 aquaporin PIP1-2 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106341842, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106341842
Gene description
aquaporin PIP1-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: C4
Exon count:
4
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (4158488..4160138)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 33-like Neighboring gene SKP1-like protein 20 Neighboring gene cytochrome P450 86A8 Neighboring gene uncharacterized LOC106341584

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aquaporin PIP genes are not expressed in the stigma papillae in Brassica oleracea. Marin-Olivier M, et al. Plant J, 2000 Oct. PMID 11069697
  2. Expression in anthers of two genes encoding Brassica oleracea transmembrane channel proteins. Ruiter RK, et al. Plant Mol Biol, 1997 May. PMID 9177322
  3. Identification and differential induction of the expression of aquaporins by salinity in broccoli plants. Muries B, et al. Mol Biosyst, 2011 Apr. PMID 21321750

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables water channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to water deprivation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasmodesma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aquaporin PIP1-2
Names
aquaporin PIP1-4
aquaporin PIP1b1
transmembrane channel protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    4158488..4160138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013780570.1 → XP_013636024.1  aquaporin PIP1-2 isoform X2

    UniProtKB/TrEMBL
    A0A3P6B2F4, A0A3P6BV45
    Conserved Domains (1) summary
    pfam00230
    Location:44 → 261
    MIP; Major intrinsic protein

  2. XM_013780569.1 → XP_013636023.1  aquaporin PIP1-2 isoform X1

    UniProtKB/TrEMBL
    A0A0D3BQ83, Q9FUL0, Q9FUL1
    Conserved Domains (1) summary
    pfam00230
    Location:44 → 273
    MIP; Major intrinsic protein
Nucleotide Protein
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