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RNA5SP130 RNA, 5S ribosomal pseudogene 130 [ Homo sapiens (human) ]

Gene ID: 106478995, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP130provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 130provided by HGNC
Primary source
HGNC:HGNC:43030
See related
Ensembl:ENSG00000201301 AllianceGenome:HGNC:43030
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S130
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Genomic context

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See RNA5SP130 in Genome Data Viewer
Location:
3p21.31
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (49467115..49467228, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (49496174..49496287, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49504548..49504661, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7935 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19868 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49455091-49455809 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49458781-49459533 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49459534-49460287 Neighboring gene T cell leukemia translocation altered Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19869 Neighboring gene aminomethyltransferase Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19871 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49496363-49497118 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49498631-49499386 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:49502186-49502686 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14366 Neighboring gene dystroglycan 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:49572171-49573169 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:49574689-49575189 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14367 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14368 Neighboring gene BSN divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 5S ribosomal 130

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044061.1 

    Range
    101..214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    49467115..49467228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    49496174..49496287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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