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RNA5SP172 RNA, 5S ribosomal pseudogene 172 [ Homo sapiens (human) ]

Gene ID: 106478997, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP172provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 172provided by HGNC
Primary source
HGNC:HGNC:43072
See related
AllianceGenome:HGNC:43072
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S172
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Genomic context

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See RNA5SP172 in Genome Data Viewer
Location:
4q34.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177457139..177457228, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180795811..180795900, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (178378293..178378382, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377558 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22170 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:178363543-178364086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22171 Neighboring gene AGA divergent transcript Neighboring gene aspartylglucosaminidase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105377559

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 5S ribosomal 172

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045128.1 

    Range
    101..190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    177457139..177457228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    180795811..180795900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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