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RNU7-171P RNA, U7 small nuclear 171 pseudogene [ Homo sapiens (human) ]

Gene ID: 106479089, updated on 17-Sep-2024

Summary

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Official Symbol
RNU7-171Pprovided by HGNC
Official Full Name
RNA, U7 small nuclear 171 pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:45705
See related
Ensembl:ENSG00000238406 AllianceGenome:HGNC:45705
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU7-171P in Genome Data Viewer
Location:
9q34.11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (128543917..128543973)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (140750768..140750824)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (131306196..131306252)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902281 Neighboring gene outer dense fiber of sperm tails 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131257065-131257565 Neighboring gene Sharpr-MPRA regulatory region 9551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29084 Neighboring gene uncharacterized LOC101929270 Neighboring gene GLE1 RNA export mediator Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20345 Neighboring gene Sharpr-MPRA regulatory region 290 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:131317315-131317814 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29085 Neighboring gene spectrin alpha, non-erythrocytic 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131389301-131389946 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:131396972-131398171 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131398224-131398974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131403137-131403741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29086 Neighboring gene dynein 2 intermediate chain 2 Neighboring gene vesicle transport through interaction with t-SNAREs 1B pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044818.1 

    Range
    101..157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    128543917..128543973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    140750768..140750824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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