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RNU6-257P RNA, U6 small nuclear 257, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479681, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-257Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 257, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47220
See related
Ensembl:ENSG00000222170 AllianceGenome:HGNC:47220
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-257P in Genome Data Viewer
Location:
16q12.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (48731704..48731801, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (54529388..54529485, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (48765615..48765712, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10799 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10800 Neighboring gene uncharacterized LOC124903687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10801 Neighboring gene Sharpr-MPRA regulatory region 15629 Neighboring gene uncharacterized LOC105371240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:48663187-48663688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:48663689-48664188 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7458 Neighboring gene MPRA-validated peak2581 silencer Neighboring gene Kruppel like factor 8 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:48807676-48808264 Neighboring gene VISTA enhancer hs101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10802 Neighboring gene NANOG hESC enhancer GRCh37_chr16:48995358-48995930 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:48997204-48998403 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49030843-49031491 Neighboring gene VISTA enhancer hs124 Neighboring gene uncharacterized LOC105371241 Neighboring gene MT-ND4L pseudogene 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043446.1 

    Range
    101..198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    48731704..48731801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    54529388..54529485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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