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RNU6-260P RNA, U6 small nuclear 260, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479682, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-260Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 260, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47223
See related
Ensembl:ENSG00000206819 AllianceGenome:HGNC:47223
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-260P in Genome Data Viewer
Location:
5q33.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (157809098..157809204)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (158331271..158331377)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (157236106..157236212)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23531 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16563 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:157171083-157171583 Neighboring gene tRNA-histidine guanylyltransferase 1 like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16564 Neighboring gene LSM11, U7 small nuclear RNA associated Neighboring gene clathrin interactor 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:157285783-157286364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:157308515-157309160 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16565 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:157346675-157346817 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:157353623-157354424 Neighboring gene uncharacterized LOC124901193 Neighboring gene ribosomal protein lateral stalk subunit P2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043456.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    157809098..157809204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    158331271..158331377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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