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RNU6-687P RNA, U6 small nuclear 687, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479869, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-687Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 687, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47650
See related
Ensembl:ENSG00000252252 AllianceGenome:HGNC:47650
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-687P in Genome Data Viewer
Location:
10q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (54452423..54452511, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (55302529..55302617, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (56212183..56212271, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378310 Neighboring gene NANOG hESC enhancer GRCh37_chr10:55097883-55098474 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:55115121-55115622 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:55115623-55116122 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55117592-55118458 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55118459-55119324 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55236154-55237043 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55252302-55252832 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55252833-55253362 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55263887-55264720 Neighboring gene RNA, 5S ribosomal pseudogene 318 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:55359661-55360417 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:55358902-55359660 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55358144-55358901 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:55357385-55358143 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:55379167-55379668 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55504311-55504990 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:55620266-55620480 Neighboring gene protocadherin related 15 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55926123-55926948 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:55926949-55927772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:55931055-55931823 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:56154165-56154833 Neighboring gene NANOG hESC enhancer GRCh37_chr10:56170367-56170915 Neighboring gene uncharacterized LOC105378311 Neighboring gene microRNA 548f-1 Neighboring gene neurofilament medium pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046037.1 

    Range
    101..189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    54452423..54452511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    55302529..55302617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases