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RNU6-817P RNA, U6 small nuclear 817, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479927, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-817Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 817, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47780
See related
Ensembl:ENSG00000212385 AllianceGenome:HGNC:47780
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-817P in Genome Data Viewer
Location:
1p13.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (116413766..116413869, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (116421836..116421939, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (116956388..116956491, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378920 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1561 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1 Neighboring gene ATP1A1 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr1:116958386-116958887 Neighboring gene Sharpr-MPRA regulatory region 13778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:116968695-116969196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:116969197-116969696 Neighboring gene long intergenic non-protein coding RNA 1762 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:116985590-116985791 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:117013937-117014172 Neighboring gene HNF1 motif-containing MPRA enhancer 99 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117020893-117021452 Neighboring gene uncharacterized LOC112268235 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:117025970-117026470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045419.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    116413766..116413869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    116421836..116421939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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