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RNU6-1048P RNA, U6 small nuclear 1048, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480027, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-1048Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1048, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48011
See related
Ensembl:ENSG00000200924 AllianceGenome:HGNC:48011
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-1048P in Genome Data Viewer
Location:
2p21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (43892692..43892795)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (43898027..43898130)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (44119831..44119934)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene dynein cytoplasmic 2 light intermediate chain 1 Neighboring gene ATP binding cassette subfamily G member 5 Neighboring gene uncharacterized LOC102725159 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11428 Neighboring gene ATP binding cassette subfamily G member 8 Neighboring gene Sharpr-MPRA regulatory region 9630 Neighboring gene leucine rich pentatricopeptide repeat containing Neighboring gene RNA, 7SL, cytoplasmic 455, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr2:44148324-44148425 Neighboring gene NANOG hESC enhancer GRCh37_chr2:44172069-44172634 Neighboring gene MPRA-validated peak3685 silencer Neighboring gene MPRA-validated peak3686 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44213323-44213823 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:44214736-44215236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:44215237-44215737 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44222679-44223330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15682 Neighboring gene NANOG hESC enhancer GRCh37_chr2:44287458-44287993 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44288829-44289402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15683 Neighboring gene uncharacterized LOC124907757

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045134.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    43892692..43892795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    43898027..43898130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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