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RNU4-77P RNA, U4 small nuclear 77, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481196, updated on 17-Sep-2024

Summary

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Official Symbol
RNU4-77Pprovided by HGNC
Official Full Name
RNA, U4 small nuclear 77, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47013
See related
Ensembl:ENSG00000252501 AllianceGenome:HGNC:47013
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU4-77P in Genome Data Viewer
Location:
1q42.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (233448626..233448781, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (232835005..232835160, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (233584372..233584527, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene pecanex 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2741 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1960 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:233463573-233463724 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1962 Neighboring gene ribosomal protein S7 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:233507364-233507864 Neighboring gene mitogen-activated protein kinase kinase kinase 21 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:233606496-233607383 Neighboring gene Sharpr-MPRA regulatory region 5532 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:233710261-233710483 Neighboring gene NANOG hESC enhancer GRCh37_chr1:233723731-233724591 Neighboring gene NANOG hESC enhancer GRCh37_chr1:233737273-233737774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2742 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:233748978-233749630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2743 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2744 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:233771758-233772307 Neighboring gene microRNA 4427 Neighboring gene NANOG hESC enhancer GRCh37_chr1:233813209-233813831 Neighboring gene NANOG hESC enhancer GRCh37_chr1:233814980-233815481 Neighboring gene potassium two pore domain channel subfamily K member 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:233824287-233825116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:233825117-233825946 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:233825947-233826776 Neighboring gene uncharacterized LOC107985362

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043282.1 

    Range
    101..256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    233448626..233448781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    232835005..232835160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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