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RNU1-8P RNA, U1 small nuclear 8, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481604, updated on 10-Oct-2023

Summary

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Official Symbol
RNU1-8Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 8, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48307
See related
Ensembl:ENSG00000207056 AllianceGenome:HGNC:48307
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNU1-8
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Genomic context

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Location:
1p36.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (7219360..7219524)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (6748690..6748854)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (7279420..7279584)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903832 Neighboring gene calmodulin binding transcription activator 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6927405-6928137 Neighboring gene ribosomal protein L37 pseudogene 9 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6967713-6968438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969150-6969650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969651-6970151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6990406-6990906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7011017-7011720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7016017-7016546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7016547-7017077 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7017078-7017607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 182 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7029419-7029919 Neighboring gene MPRA-validated peak33 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7039565-7040410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 183 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:7086000-7087199 Neighboring gene CAMTA1 antisense RNA 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7109791-7110690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 89 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:7142559-7142729 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:7153467-7153661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7209665-7210272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7234210-7234710 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7237955-7238455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7284388-7284888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7284889-7285389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7305529-7306030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7344591-7345092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7354235-7354752 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:7377679-7378878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7395955-7396832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7433523-7434023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7438503-7439129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7439130-7439755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7439756-7440382 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7440383-7441007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7448189-7448726 Neighboring gene CAMTA1 intronic transcript 1 Neighboring gene CAMTA1 antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045856.1 

    Range
    101..265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    7219360..7219524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    6748690..6748854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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