U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FRGCA FOXM1-regulated, gastric cancer associated [ Homo sapiens (human) ]

Gene ID: 106481742, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
FRGCAprovided by HGNC
Official Full Name
FOXM1-regulated, gastric cancer associatedprovided by HGNC
Primary source
HGNC:HGNC:51844
See related
AllianceGenome:HGNC:51844
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43140523..43141092, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (41531600..41532169, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (44560633..44561202, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene U2 small nuclear RNA auxiliary factor 1 Neighboring gene uncharacterized LOC101928369 Neighboring gene Sharpr-MPRA regulatory region 15309 Neighboring gene mitochondrial ribosomal protein L51 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44561595-44562132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44562133-44562668 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44567999-44568546 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:44568789-44568956 Neighboring gene uncharacterized LOC107987300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44574129-44574799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44575915-44576652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44576653-44577388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44581185-44581930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44586921-44587466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44592742-44593372 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44593373-44594003 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44595943-44596480 Neighboring gene uncharacterized LOC105372821 Neighboring gene crystallin alpha A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LncRNA-AP001631.9 promotes cell migration in gastric cancer. Cai H, et al. Int J Clin Exp Pathol, 2015. PMID 26261500, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • LncRNA-AP001631.9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133677.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001631

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    43140523..43141092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    41531600..41532169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases