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rnf168 ring finger protein 168 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106580664, updated on 12-Sep-2024

Summary

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Gene symbol
rnf168
Gene description
ring finger protein 168
See related
Ensembl:ENSSSAG00000072327
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See rnf168 in Genome Data Viewer
Location:
chromosome: ssa20
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (44347296..44356212, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (42577708..42586527, complement)

Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene P2Y purinoceptor 14 Neighboring gene transmembrane 4 L6 family member 5 Neighboring gene anoctamin 7 Neighboring gene endothelin converting enzyme 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase rnf168

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059461.1 Reference Ssal_v3.1

    Range
    44347296..44356212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014161963.2 → XP_014017438.1  E3 ubiquitin-protein ligase rnf168

    UniProtKB/TrEMBL
    A0A1S3NPR7
    Related
    ENSSSAP00000094203.2, ENSSSAT00000128505.2
    Conserved Domains (1) summary
    cd00162
    Location:27 → 69
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

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