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LOC106610721 actin, alpha skeletal muscle 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106610721, updated on 18-Aug-2023

Summary

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Gene symbol
LOC106610721
Gene description
actin, alpha skeletal muscle 2
See related
Ensembl:ENSSSAG00000000156
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
actc1-1
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Genomic context

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See LOC106610721 in Genome Data Viewer
Location:
chromosome: ssa01
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (95925899..95929289, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (81724076..81727594, complement)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-4A Neighboring gene centriole, cilia and spindle-associated protein b Neighboring gene ATP-binding cassette sub-family B member 10, mitochondrial-like Neighboring gene unhealthy ribosome biogenesis protein 2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
actin, alpha skeletal muscle 2
Names
actin alpha 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    95925899..95929289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014210238.2 → XP_014065713.1  actin, alpha skeletal muscle 2

    UniProtKB/TrEMBL
    B5X872, Q78BU2
    Related
    ENSSSAP00000000221.2, ENSSSAT00000000254.2
    Conserved Domains (1) summary
    cl17037
    Location:4 → 377
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
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