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LOC106611749 ADP/ATP translocase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106611749, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106611749
Gene description
ADP/ATP translocase 2
See related
Ensembl:ENSSSAG00000046616
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
ADT2
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Genomic context

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See LOC106611749 in Genome Data Viewer
Location:
chromosome: ssa09
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (69826575..69829370, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (63434558..63437294, complement)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene 39S ribosomal protein L11, mitochondrial Neighboring gene transmembrane protein 121 Neighboring gene uncharacterized LOC106611750 Neighboring gene solute carrier family 25 member 43-like Neighboring gene ligand of Numb protein X 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  3. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP:ADP antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial ADP transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial ATP transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP/ATP translocase 2
Names
solute carrier family 25-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    69826575..69829370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014212291.2 → XP_014067766.1  ADP/ATP translocase 2

    UniProtKB/TrEMBL
    B5DGZ0, B5XEQ7
    Related
    ENSSSAP00000044579.1, ENSSSAT00000071341.2
    Conserved Domains (1) summary
    PTZ00169
    Location:7 → 297
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
Nucleotide Protein
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