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LOC106612255 SPARC [ Salmo salar (Atlantic salmon) ]

Gene ID: 106612255, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106612255
Gene description
SPARC
See related
Ensembl:ENSSSAG00000056353
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
SPRC
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Genomic context

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See LOC106612255 in Genome Data Viewer
Location:
chromosome: ssa09
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (92792269..92814974)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (85035044..85056629, complement)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene proton-coupled amino acid transporter 1-like Neighboring gene melatonin receptor type 1A like Neighboring gene copper transport protein ATOX1 Neighboring gene glycine receptor, alpha 1 Neighboring gene GTPase activating protein (SH3 domain) binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Atlantic salmon (Salmo salar) muscle precursor cells differentiate into osteoblasts in vitro: polyunsaturated fatty acids and hyperthermia influence gene expression and differentiation. Ytteborg E, et al. Biochim Biophys Acta, 2010 Feb. PMID 19833228
  2. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  3. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  4. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPARC
Names
osteonectin
secreted acidic cysteine rich glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    92792269..92814974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045724229.1 → XP_045580185.1  SPARC

    UniProtKB/TrEMBL
    B5DGF9
    Related
    ENSSSAP00000061510.1, ENSSSAT00000091484.2
    Conserved Domains (2) summary
    cd01328
    Location:67 → 148
    FSL_SPARC; Follistatin-like SPARC (secreted protein, acidic, and rich in cysteines) domain; SPARC/BM-40/osteonectin is a multifunctional glycoprotein which modulates cellular interaction with the extracellular matrix by its binding to structural matrix proteins ...
    cd16235
    Location:151 → 290
    EFh_SPARC_SPARC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)
Nucleotide Protein
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