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LOC106613625 ubiquitin-60S ribosomal protein L40 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106613625, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106613625
Gene description
ubiquitin-60S ribosomal protein L40
See related
Ensembl:ENSSSAG00000049739
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
UBIQ; Ubiquitin
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Genomic context

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See LOC106613625 in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (16596744..16598901)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (14713116..14715167)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene arrestin domain-containing protein 2 Neighboring gene Arrestin domain-containing protein 3 Neighboring gene uncharacterized LOC106613624 Neighboring gene homer scaffold protein 3b Neighboring gene regulator of nonsense transcripts 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Micallef G, et al. Mar Biotechnol (NY), 2012 Oct. PMID 22527268
  3. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40
Names
ubiquitin A-52 residue ribosomal protein fusion product 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    16596744..16598901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014216074.2 → XP_014071549.1  ubiquitin-60S ribosomal protein L40

    UniProtKB/TrEMBL
    B5DGL2, C0H7C3
    Related
    ENSSSAP00000049671.1, ENSSSAT00000077601.2
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
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