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lrrc40 leucine rich repeat containing 40 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106613882, updated on 13-Mar-2024

Summary

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Gene symbol
lrrc40
Gene description
leucine rich repeat containing 40
See related
Ensembl:ENSSSAG00000060461
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
LRC40; lrrc2
Orthologs
human zebrafish all
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Genomic context

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See lrrc40 in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (26160023..26166903)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (24210748..24217633)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106613880 Neighboring gene uncharacterized LOC106613879 Neighboring gene SRY-box transcription factor 2 Neighboring gene leucine-rich repeat-containing protein 7-like Neighboring gene DEP domain containing 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  3. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 40
Names
Leucine-rich repeat-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    26160023..26166903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014216597.2 → XP_014072072.1  leucine-rich repeat-containing protein 40

    UniProtKB/TrEMBL
    B5DG62
    Related
    ENSSSAP00000067692.1, ENSSSAT00000099470.2
    Conserved Domains (3) summary
    cd00116
    Location:125 → 343
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:106 → 128
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:263 → 322
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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