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SNORA86 small nucleolar RNA, H/ACA box 86 [ Homo sapiens (human) ]

Gene ID: 106633814, updated on 10-Oct-2023

Summary

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Official Symbol
SNORA86provided by HGNC
Official Full Name
small nucleolar RNA, H/ACA box 86provided by HGNC
Primary source
HGNC:HGNC:50390
See related
AllianceGenome:HGNC:50390
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
10p11.22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (32901334..32901472, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (32930058..32930196, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (33190262..33190400, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 7 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32805360-32805595 Neighboring gene C1D nuclear receptor corepressor pseudogene 1 Neighboring gene uncharacterized LOC124902406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:33176139-33176640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:33176641-33177140 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3249 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:33245856-33246017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3250 Neighboring gene integrin subunit beta 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:33252634-33253444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33269180-33269742 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33269743-33270305 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33284303-33284803 Neighboring gene AK3 pseudogene 5 Neighboring gene ITGB1 divergent transcript Neighboring gene MT-ND4L pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies. Machyna M, et al. Mol Cell, 2014 Nov 6. PMID 25514182

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132768.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365203

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    32901334..32901472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    32930058..32930196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases