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RN7SKP173 RN7SK pseudogene 173 [ Homo sapiens (human) ]

Gene ID: 106635535, updated on 17-Sep-2024

Summary

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Official Symbol
RN7SKP173provided by HGNC
Official Full Name
RN7SK pseudogene 173provided by HGNC
Primary source
HGNC:HGNC:45897
See related
AllianceGenome:HGNC:45897
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SKP173 in Genome Data Viewer
Location:
20q11.23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (38761528..38761766)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (40491684..40491922)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37390171..37390409)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 40 Neighboring gene GINS complex subunit 2 (Psf2 homolog) pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12900 Neighboring gene GATA motif-containing MPRA enhancer 112/113 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12901 Neighboring gene MPRA-validated peak4211 silencer Neighboring gene VISTA enhancer hs2620 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:37342659-37343160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37354984-37355521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37355736-37356396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37357057-37357716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37360147-37360672 Neighboring gene solute carrier family 32 member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:37376699-37377200 Neighboring gene actin related protein 5 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37408141-37408805 Neighboring gene uncharacterized LOC124904902 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:37409138-37409638 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:37409639-37410139 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37410633-37411244 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37411245-37411854 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37432653-37433515 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37433516-37434377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37434958-37435796 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17863 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:37446609-37447156 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:37447157-37447704 Neighboring gene protein phosphatase 1 regulatory subunit 16B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17865 Neighboring gene Sharpr-MPRA regulatory region 4490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17866 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17869 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37499114-37499684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17872 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17873 Neighboring gene RNA, 7SL, cytoplasmic 116, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 173

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042887.1 

    Range
    101..339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    38761528..38761766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    40491684..40491922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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