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avl9 AVL9 homolog (S. cerevisiase) [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106965301, updated on 13-Mar-2024

Summary

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Gene symbol
avl9
Gene description
AVL9 homolog (S. cerevisiase)
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See avl9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114414.1 (40358..56456, complement)

NW_015114414.1Genomic Context describing neighboring genes Neighboring gene bucky ball Neighboring gene kelch repeat and BTB (POZ) domain containing 2 Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene proteasome activator subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114414.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
late secretory pathway protein AVL9 homolog
Names
AVL9 cell migration associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114414.1 Reference P_latipinna-1.0

    Range
    40358..56456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015061308.1 → XP_014916794.1  late secretory pathway protein AVL9 homolog

    Conserved Domains (3) summary
    pfam07792
    Location:13 → 75
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:13 → 494
    Avl9; Transport protein Avl9
    cl11519
    Location:113 → 223
    DENN; DENN (AEX-3) domain
Nucleotide Protein
Heading Accession and Version

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